Bumping k8s dependencies to 1.13
This commit is contained in:
Cheng Xing
156
vendor/google.golang.org/genproto/googleapis/genomics/v1/readgroup.pb.go
generated
vendored
156
vendor/google.golang.org/genproto/googleapis/genomics/v1/readgroup.pb.go
generated
vendored
@@ -3,52 +3,83 @@
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package genomics
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import proto "github.com/golang/protobuf/proto"
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import fmt "fmt"
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import math "math"
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import _ "google.golang.org/genproto/googleapis/api/annotations"
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import google_protobuf3 "github.com/golang/protobuf/ptypes/struct"
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import (
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fmt "fmt"
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proto "github.com/golang/protobuf/proto"
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_struct "github.com/golang/protobuf/ptypes/struct"
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_ "google.golang.org/genproto/googleapis/api/annotations"
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math "math"
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)
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// Reference imports to suppress errors if they are not otherwise used.
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var _ = proto.Marshal
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var _ = fmt.Errorf
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var _ = math.Inf
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// This is a compile-time assertion to ensure that this generated file
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// is compatible with the proto package it is being compiled against.
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// A compilation error at this line likely means your copy of the
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// proto package needs to be updated.
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const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package
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// A read group is all the data that's processed the same way by the sequencer.
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type ReadGroup struct {
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// The server-generated read group ID, unique for all read groups.
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// Note: This is different than the @RG ID field in the SAM spec. For that
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// value, see [name][google.genomics.v1.ReadGroup.name].
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Id string `protobuf:"bytes,1,opt,name=id" json:"id,omitempty"`
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Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
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// The dataset to which this read group belongs.
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DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId" json:"dataset_id,omitempty"`
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DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
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// The read group name. This corresponds to the @RG ID field in the SAM spec.
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Name string `protobuf:"bytes,3,opt,name=name" json:"name,omitempty"`
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Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
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// A free-form text description of this read group.
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Description string `protobuf:"bytes,4,opt,name=description" json:"description,omitempty"`
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Description string `protobuf:"bytes,4,opt,name=description,proto3" json:"description,omitempty"`
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// A client-supplied sample identifier for the reads in this read group.
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SampleId string `protobuf:"bytes,5,opt,name=sample_id,json=sampleId" json:"sample_id,omitempty"`
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SampleId string `protobuf:"bytes,5,opt,name=sample_id,json=sampleId,proto3" json:"sample_id,omitempty"`
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// The experiment used to generate this read group.
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Experiment *ReadGroup_Experiment `protobuf:"bytes,6,opt,name=experiment" json:"experiment,omitempty"`
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Experiment *ReadGroup_Experiment `protobuf:"bytes,6,opt,name=experiment,proto3" json:"experiment,omitempty"`
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// The predicted insert size of this read group. The insert size is the length
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// the sequenced DNA fragment from end-to-end, not including the adapters.
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PredictedInsertSize int32 `protobuf:"varint,7,opt,name=predicted_insert_size,json=predictedInsertSize" json:"predicted_insert_size,omitempty"`
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PredictedInsertSize int32 `protobuf:"varint,7,opt,name=predicted_insert_size,json=predictedInsertSize,proto3" json:"predicted_insert_size,omitempty"`
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// The programs used to generate this read group. Programs are always
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// identical for all read groups within a read group set. For this reason,
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// only the first read group in a returned set will have this field
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// populated.
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Programs []*ReadGroup_Program `protobuf:"bytes,10,rep,name=programs" json:"programs,omitempty"`
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Programs []*ReadGroup_Program `protobuf:"bytes,10,rep,name=programs,proto3" json:"programs,omitempty"`
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// The reference set the reads in this read group are aligned to.
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ReferenceSetId string `protobuf:"bytes,11,opt,name=reference_set_id,json=referenceSetId" json:"reference_set_id,omitempty"`
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ReferenceSetId string `protobuf:"bytes,11,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
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// A map of additional read group information. This must be of the form
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// map<string, string[]> (string key mapping to a list of string values).
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Info map[string]*google_protobuf3.ListValue `protobuf:"bytes,12,rep,name=info" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
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Info map[string]*_struct.ListValue `protobuf:"bytes,12,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
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XXX_NoUnkeyedLiteral struct{} `json:"-"`
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XXX_unrecognized []byte `json:"-"`
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XXX_sizecache int32 `json:"-"`
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}
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func (m *ReadGroup) Reset() { *m = ReadGroup{} }
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func (m *ReadGroup) String() string { return proto.CompactTextString(m) }
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func (*ReadGroup) ProtoMessage() {}
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func (*ReadGroup) Descriptor() ([]byte, []int) { return fileDescriptor7, []int{0} }
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func (m *ReadGroup) Reset() { *m = ReadGroup{} }
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func (m *ReadGroup) String() string { return proto.CompactTextString(m) }
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func (*ReadGroup) ProtoMessage() {}
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func (*ReadGroup) Descriptor() ([]byte, []int) {
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return fileDescriptor_78f10e430d3182d6, []int{0}
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}
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func (m *ReadGroup) XXX_Unmarshal(b []byte) error {
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return xxx_messageInfo_ReadGroup.Unmarshal(m, b)
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}
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func (m *ReadGroup) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
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return xxx_messageInfo_ReadGroup.Marshal(b, m, deterministic)
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}
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func (m *ReadGroup) XXX_Merge(src proto.Message) {
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xxx_messageInfo_ReadGroup.Merge(m, src)
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}
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func (m *ReadGroup) XXX_Size() int {
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return xxx_messageInfo_ReadGroup.Size(m)
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}
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func (m *ReadGroup) XXX_DiscardUnknown() {
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xxx_messageInfo_ReadGroup.DiscardUnknown(m)
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}
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var xxx_messageInfo_ReadGroup proto.InternalMessageInfo
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func (m *ReadGroup) GetId() string {
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if m != nil {
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@@ -113,7 +144,7 @@ func (m *ReadGroup) GetReferenceSetId() string {
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return ""
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}
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func (m *ReadGroup) GetInfo() map[string]*google_protobuf3.ListValue {
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func (m *ReadGroup) GetInfo() map[string]*_struct.ListValue {
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if m != nil {
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return m.Info
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}
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@@ -125,22 +156,45 @@ type ReadGroup_Experiment struct {
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// fragments which have been prepared for sequencing from a sample. This
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// field is important for quality control as error or bias can be introduced
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// during sample preparation.
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LibraryId string `protobuf:"bytes,1,opt,name=library_id,json=libraryId" json:"library_id,omitempty"`
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LibraryId string `protobuf:"bytes,1,opt,name=library_id,json=libraryId,proto3" json:"library_id,omitempty"`
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// The platform unit used as part of this experiment, for example
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// flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the
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// @RG PU field in the SAM spec.
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PlatformUnit string `protobuf:"bytes,2,opt,name=platform_unit,json=platformUnit" json:"platform_unit,omitempty"`
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PlatformUnit string `protobuf:"bytes,2,opt,name=platform_unit,json=platformUnit,proto3" json:"platform_unit,omitempty"`
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// The sequencing center used as part of this experiment.
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SequencingCenter string `protobuf:"bytes,3,opt,name=sequencing_center,json=sequencingCenter" json:"sequencing_center,omitempty"`
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SequencingCenter string `protobuf:"bytes,3,opt,name=sequencing_center,json=sequencingCenter,proto3" json:"sequencing_center,omitempty"`
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// The instrument model used as part of this experiment. This maps to
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// sequencing technology in the SAM spec.
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InstrumentModel string `protobuf:"bytes,4,opt,name=instrument_model,json=instrumentModel" json:"instrument_model,omitempty"`
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InstrumentModel string `protobuf:"bytes,4,opt,name=instrument_model,json=instrumentModel,proto3" json:"instrument_model,omitempty"`
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XXX_NoUnkeyedLiteral struct{} `json:"-"`
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XXX_unrecognized []byte `json:"-"`
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XXX_sizecache int32 `json:"-"`
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}
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func (m *ReadGroup_Experiment) Reset() { *m = ReadGroup_Experiment{} }
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func (m *ReadGroup_Experiment) String() string { return proto.CompactTextString(m) }
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func (*ReadGroup_Experiment) ProtoMessage() {}
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func (*ReadGroup_Experiment) Descriptor() ([]byte, []int) { return fileDescriptor7, []int{0, 0} }
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func (m *ReadGroup_Experiment) Reset() { *m = ReadGroup_Experiment{} }
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func (m *ReadGroup_Experiment) String() string { return proto.CompactTextString(m) }
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func (*ReadGroup_Experiment) ProtoMessage() {}
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func (*ReadGroup_Experiment) Descriptor() ([]byte, []int) {
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return fileDescriptor_78f10e430d3182d6, []int{0, 0}
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}
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func (m *ReadGroup_Experiment) XXX_Unmarshal(b []byte) error {
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return xxx_messageInfo_ReadGroup_Experiment.Unmarshal(m, b)
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}
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func (m *ReadGroup_Experiment) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
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return xxx_messageInfo_ReadGroup_Experiment.Marshal(b, m, deterministic)
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}
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func (m *ReadGroup_Experiment) XXX_Merge(src proto.Message) {
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xxx_messageInfo_ReadGroup_Experiment.Merge(m, src)
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}
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func (m *ReadGroup_Experiment) XXX_Size() int {
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return xxx_messageInfo_ReadGroup_Experiment.Size(m)
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}
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func (m *ReadGroup_Experiment) XXX_DiscardUnknown() {
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xxx_messageInfo_ReadGroup_Experiment.DiscardUnknown(m)
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}
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var xxx_messageInfo_ReadGroup_Experiment proto.InternalMessageInfo
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func (m *ReadGroup_Experiment) GetLibraryId() string {
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if m != nil {
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@@ -172,23 +226,46 @@ func (m *ReadGroup_Experiment) GetInstrumentModel() string {
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type ReadGroup_Program struct {
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// The command line used to run this program.
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CommandLine string `protobuf:"bytes,1,opt,name=command_line,json=commandLine" json:"command_line,omitempty"`
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CommandLine string `protobuf:"bytes,1,opt,name=command_line,json=commandLine,proto3" json:"command_line,omitempty"`
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// The user specified locally unique ID of the program. Used along with
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// `prevProgramId` to define an ordering between programs.
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Id string `protobuf:"bytes,2,opt,name=id" json:"id,omitempty"`
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Id string `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
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// The display name of the program. This is typically the colloquial name of
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// the tool used, for example 'bwa' or 'picard'.
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Name string `protobuf:"bytes,3,opt,name=name" json:"name,omitempty"`
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Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
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// The ID of the program run before this one.
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PrevProgramId string `protobuf:"bytes,4,opt,name=prev_program_id,json=prevProgramId" json:"prev_program_id,omitempty"`
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PrevProgramId string `protobuf:"bytes,4,opt,name=prev_program_id,json=prevProgramId,proto3" json:"prev_program_id,omitempty"`
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// The version of the program run.
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Version string `protobuf:"bytes,5,opt,name=version" json:"version,omitempty"`
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Version string `protobuf:"bytes,5,opt,name=version,proto3" json:"version,omitempty"`
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XXX_NoUnkeyedLiteral struct{} `json:"-"`
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XXX_unrecognized []byte `json:"-"`
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XXX_sizecache int32 `json:"-"`
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}
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func (m *ReadGroup_Program) Reset() { *m = ReadGroup_Program{} }
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func (m *ReadGroup_Program) String() string { return proto.CompactTextString(m) }
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func (*ReadGroup_Program) ProtoMessage() {}
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func (*ReadGroup_Program) Descriptor() ([]byte, []int) { return fileDescriptor7, []int{0, 1} }
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func (m *ReadGroup_Program) Reset() { *m = ReadGroup_Program{} }
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func (m *ReadGroup_Program) String() string { return proto.CompactTextString(m) }
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func (*ReadGroup_Program) ProtoMessage() {}
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func (*ReadGroup_Program) Descriptor() ([]byte, []int) {
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return fileDescriptor_78f10e430d3182d6, []int{0, 1}
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}
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func (m *ReadGroup_Program) XXX_Unmarshal(b []byte) error {
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return xxx_messageInfo_ReadGroup_Program.Unmarshal(m, b)
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}
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func (m *ReadGroup_Program) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
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return xxx_messageInfo_ReadGroup_Program.Marshal(b, m, deterministic)
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}
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func (m *ReadGroup_Program) XXX_Merge(src proto.Message) {
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xxx_messageInfo_ReadGroup_Program.Merge(m, src)
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}
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func (m *ReadGroup_Program) XXX_Size() int {
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return xxx_messageInfo_ReadGroup_Program.Size(m)
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}
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func (m *ReadGroup_Program) XXX_DiscardUnknown() {
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xxx_messageInfo_ReadGroup_Program.DiscardUnknown(m)
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}
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var xxx_messageInfo_ReadGroup_Program proto.InternalMessageInfo
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func (m *ReadGroup_Program) GetCommandLine() string {
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if m != nil {
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@@ -227,13 +304,14 @@ func (m *ReadGroup_Program) GetVersion() string {
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func init() {
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proto.RegisterType((*ReadGroup)(nil), "google.genomics.v1.ReadGroup")
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proto.RegisterMapType((map[string]*_struct.ListValue)(nil), "google.genomics.v1.ReadGroup.InfoEntry")
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proto.RegisterType((*ReadGroup_Experiment)(nil), "google.genomics.v1.ReadGroup.Experiment")
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proto.RegisterType((*ReadGroup_Program)(nil), "google.genomics.v1.ReadGroup.Program")
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}
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func init() { proto.RegisterFile("google/genomics/v1/readgroup.proto", fileDescriptor7) }
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func init() { proto.RegisterFile("google/genomics/v1/readgroup.proto", fileDescriptor_78f10e430d3182d6) }
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var fileDescriptor7 = []byte{
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var fileDescriptor_78f10e430d3182d6 = []byte{
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// 585 bytes of a gzipped FileDescriptorProto
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0x1f, 0x8b, 0x08, 0x00, 0x00, 0x00, 0x00, 0x00, 0x02, 0xff, 0x7c, 0x54, 0xcb, 0x6e, 0xd4, 0x30,
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0x14, 0x55, 0xa6, 0xcf, 0xb9, 0xd3, 0xc7, 0x60, 0x04, 0x8a, 0x06, 0x90, 0x86, 0x22, 0x60, 0x10,
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